Plot SCIntRuler — PlotSCIR • SCIntRuler

Plot SCIntRuler

PlotSCIR(fullcluster, seuratlist, testres, legendtitle = NULL, title = NULL)

Arguments

fullcluster: A list of clusters that generated by the function GetCluster.
seuratlist: A list of Seurat objects, usually can be got by SplitObject().
testres: Result from function PermTest()
legendtitle: Title of legend, default to be NULL
title: Title of figure, default to be NULL

Value

A ggplot2 object

Examples

# Create example data for fullcluster (mock data)
data(sim_data_sce)
data(sim_result)
# if(is(sim_data_sce, "SingleCellExperiment")){ sim_data <- as.Seurat(sim_data_sce) }
sim_data <- SCEtoSeurat(sim_data_sce)
#> Warning: No gene metadata columns found to add to Seurat object.
seuratlist <- Seurat::SplitObject(sim_data, split.by = "Study")
# fullcluster <- GetCluster(seurat_object_list)
# testres <- PermTest(fullcluster,distmat,15)
PlotSCIR(sim_result[[1]], seuratlist, sim_result[[4]])